FragmentCut is an algorithm designed to identify DNA fragments for haplotype assembly from dilution pool sequencing experiments. Source code is available from the github repository

A paper describing the FragmentCut algorithm has been published in the journal Bioinformatics: "An accurate algorithm for the detection of DNA fragments from dilution pool sequencing experiments".

List of dilution pool sequence datasets:

NA12878 SOLiD 32 fosmid pools http://nar.oxfordjournals.org/content/early/2011/11/17/nar.gkr1042.full

Data from this paper (including processed fragments) can be downloaded from: https://owww.molgen.mpg.de/~genetic-variation/SIH/Data/

NA12878 Illumina 192 dilution pools amplified by MDA https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3619281/

NA20847 Illumina 115 fosmid pools http://www.nature.com/nbt/journal/v29/n1/full/nbt.1740.html

NA19240 Illumina 288 fosmid pools http://biorxiv.org/content/early/2014/08/22/008367

NA19240 Complete-Genomics LFR 384 wells + MDA https://www.ncbi.nlm.nih.gov/sra/SRX145832 other genomes (NA12892, NA12891 and NA12877 are also available)